Changes between Version 8 and Version 9 of Installation

Timestamp:

Feb 4, 2016, 12:26:52 PM (9 years ago)

Author:

Pedro Gea

Comment:

--

Installation

@@ -30 +30 @@
 == Additional installation instructions ==
 
-Some TOL packages (for example, BysInfDiag) uses R calls to obtain some statistic information. For avoid errors when you use these packages we recommend:
+Some TOL packages (for example, BysInfDiag) uses R calls (by command line) to obtain some statistic information. For avoid errors when you use these packages we recommend:
 
 === Install R ===
@@ -46 +46 @@
 === Install some R-packages ===
 
-Some of the mentioned TOL packages requires from some R-packages: quadprog, coda, Rglpk, slam and mcgibbsit.
+Some of the mentioned TOL packages requires from some R-packages: 
 
-To install it, you can run the following sentences in R:
+ 1. [http://cran.r-project.org/web/packages/quadprog/index.html quadprog] : Functions to solve Quadratic Programming Problems.
+ 1. [http://www-fis.iarc.fr/coda/ coda] : Output analysis and diagnostics for MCMC.
+ 1. [http://cran.r-project.org/web/packages/mcgibbsit/index.html mcgibbsit] : provides an implementation of Warnes & Raftery's MCGibbsit run-length diagnostic for a set of (not-necessarily independent) MCMC samplers
+ 1. [http://cran.r-project.org/web/packages/slam/index.html slam] : Sparse Lightweight Arrays and Matrices.
+ 1. [http://cran.r-project.org/web/packages/Rglpk/Rglpk.pdf Rglpk] : solving large-scale linear programming (LP), mixed integer linear programming (MILP) and other related problems.
+
+All them are available as CRAN standard package and can be installed from R-GUI application using the option "Install package" from menu "Package".
+
+Otherwise, you also can run the following sentences in an R console:
 {{{
 #!ruby
@@ -58 +66 @@
 }}}
 
-== External downloads required ==
-
-In order to use some TOL functions and subsystems it's also needed to install another open source packages or libraries, that are listed in TolAcknowledgements. Linux systems have should have their own package manager (RPM, DEB, etc) for almost all these components. In other case user must install them following owner instructions. For Windows 32 bits systems all them are prebuilt in a transparent way for ussers and are distributed with TOL Binary Setup.
-
-!!!!
-
-All them but R, are linked by TOL and calling is made internally by C or C++ interface. TOL calls R (>=2.6.0) by command line, so it must be installed in your system directly from [http://www.r-project.org/ the official R site]. Note that R console executable must be in user path environment variable. Afterwords installing R user must install these R packages:
- 1. [http://cran.r-project.org/web/packages/quadprog/index.html quadprog] : Functions to solve Quadratic Programming Problems.
- 1. [http://www-fis.iarc.fr/coda/ coda] : Output analysis and diagnostics for MCMC.
- 1. [http://cran.r-project.org/web/packages/Rglpk/Rglpk.pdf Rglpk] : solving large-scale linear programming (LP), mixed integer linear programming (MILP) and other related problems.
- 1. [http://cran.r-project.org/web/packages/slam/index.html slam] : Sparse Lightweight Arrays and Matrices.
- 1. [http://cran.r-project.org/web/packages/mcgibbsit/index.html] : provides an implementation of Warnes & Raftery's MCGibbsit run-length diagnostic for a set of (not-necessarily independent) MCMC samplers
-
-All them are available as CRAN standard package and can be installed from R-Gui application using menu Package / Install package.
-You also can run this commands from an R console:
-{{{
-  install.packages("quadprog")
-  install.packages("coda")
-  install.packages("Rglpk")
-  install.packages("slam")
-  install.packages("mcgibbsit")
-}}}
-
-In Debian based LINUX the simplest way is following these steps
-{{{
-  sudo apt-get install r-base
-  sudo apt-get install r-cran-quadprog
-  sudo apt-get install r-cran-coda
-  sudo apt-get install r-cran-rglpk
-  sudo apt-get install r-cran-slam
-  sudo apt-get install r-cran-mcgibbsit
-}}}