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In order to use some TOL functions and subsystems it's also needed to install another open source packages or libraries, that are listed in TolAcknowledgements. Linux systems have should have their own package manager (RPM, DEB, etc) for almost all these components. In other case user must install them following owner instructions. For Windows 32 bits systems all them are prebuilt in a transparent way for ussers and are distributed with TOL Binary Setup.
!!!!
All them but R, are linked by TOL and calling is made internally by C or C++ interface. TOL calls R (>=2.6.0) by command line, so it must be installed in your system directly from the official R site. Note that R console executable must be in user path environment variable. Afterwords installing R user must install these R packages:
- quadprog : Functions to solve Quadratic Programming Problems.
- coda : Output analysis and diagnostics for MCMC.
- Rglpk : solving large-scale linear programming (LP), mixed integer linear programming (MILP) and other related problems.
- slam : Sparse Lightweight Arrays and Matrices.
- http://cran.r-project.org/web/packages/mcgibbsit/index.html : provides an implementation of Warnes & Raftery's MCGibbsit run-length diagnostic for a set of (not-necessarily independent) MCMC samplers
All them are available as CRAN standard package and can be installed from R-Gui application using menu Package / Install package. You also can run this commands from an R console:
install.packages("quadprog")
install.packages("coda")
install.packages("Rglpk")
install.packages("slam")
install.packages("mcgibbsit")
In Debian based LINUX the simplest way is following these steps
sudo apt-get install r-base sudo apt-get install r-cran-quadprog sudo apt-get install r-cran-coda sudo apt-get install r-cran-rglpk sudo apt-get install r-cran-slam sudo apt-get install r-cran-mcgibbsit
